GOLDMARK: Public Computational Pathology Portal

Stage Summary Pipeline status at a glance Pipeline

Features
Feature scan disabled for faster page loads
Inference
No inference results detected
Manifest
411 rows, 15 columns
Tiling
Tiling directory present; assuming complete coverage
Training
Training directory present but no classification reports found

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

411 rows · 15 columns

Target: DETAILEDTUMORTYPE Target: GENERALTUMORTYPE Target: ONCOTREE_CODE Target: SAMPLETYPE Target: PRIMARYSITE Target: METASTASISSITE Target: CANCER.TYPE.ORIGINAL Target: CANCER.TYPE Target: SCANNED_SLIDES_EXIST Target: BRAF Target: NRAS Target: PTEN Target: MAP2K1

DMP_ASSAY_ID	DetailedTumorType	GeneralTumorType	OncoTree_Code	SampleType	PrimarySite	MetastasisSite	Cancer.Type.Original	Cancer.Type	scanned_slides_exist	file_name	BRAF	NRAS	PTEN	MAP2K1
C3L-04212-22	Cutaneous Melanoma	Melanoma	SKCM	Primary	Skin	Not Applicable	Cutaneous Melanoma	Cutaneous Melanoma	True	C3L-04212-22.svs	Negative	Negative	Negative	Negative
C3N-03239-21	Cutaneous Melanoma	Melanoma	SKCM	Primary	Skin	Not Applicable	Cutaneous Melanoma	Cutaneous Melanoma	True	C3N-03239-21.svs	Negative	Negative	Negative	Negative
C3N-03913-21	Cutaneous Melanoma	Melanoma	SKCM	Primary	Skin	Not Applicable	Cutaneous Melanoma	Cutaneous Melanoma	True	C3N-03913-21.svs	Negative	Negative	Negative	Negative
C3N-01530-22	Cutaneous Melanoma	Melanoma	SKCM	Primary	Skin	Not Applicable	Cutaneous Melanoma	Cutaneous Melanoma	True	C3N-01530-22.svs	Negative	Negative	Negative	Negative
C3N-02035-22	Cutaneous Melanoma	Melanoma	SKCM	Primary	Skin	Not Applicable	Cutaneous Melanoma	Cutaneous Melanoma	True	C3N-02035-22.svs	Negative	Negative	Negative	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference