CPTAC-HNSCC
Features
Inference
Manifest
Tiling
Training
Stage Summary
Pipeline status at a glance
Pipeline
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FeaturesFeature scan disabled for faster page loads
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InferenceNo inference results detected
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Manifest390 rows, 13 columns
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TilingTiling directory present; assuming complete coverage
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TrainingTraining directory present but no classification reports found
Case Summary
Track cohort coverage by encoder
Cohort
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Total cases390
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Tiling completed390
Cases
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Cases
Manifest Overview
Preview the manifest and target distribution
Manifest
Target: DETAILEDTUMORTYPE
Target: GENERALTUMORTYPE
Target: ONCOTREE_CODE
Target: SAMPLETYPE
Target: PRIMARYSITE
Target: METASTASISSITE
Target: CANCER.TYPE.ORIGINAL
Target: CANCER.TYPE
Target: SCANNED_SLIDES_EXIST
Target: HRAS
Target: PIK3CA
| DMP_ASSAY_ID | DetailedTumorType | GeneralTumorType | OncoTree_Code | SampleType | PrimarySite | MetastasisSite | Cancer.Type.Original | Cancer.Type | scanned_slides_exist | file_name | HRAS | PIK3CA |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C3N-01944-21 | Head and Neck Squamous Cell Carcinoma | Head and Neck Cancer | HNSC | Primary | Head/Neck | Not Applicable | Head and Neck Squamous Cell Carcinoma | Head and Neck Squamous Cell Carcinoma | True | C3N-01944-21.svs | Negative | Negative |
| C3N-03009-23 | Head and Neck Squamous Cell Carcinoma | Head and Neck Cancer | HNSC | Primary | Head/Neck | Not Applicable | Head and Neck Squamous Cell Carcinoma | Head and Neck Squamous Cell Carcinoma | True | C3N-03009-23.svs | Negative | Negative |
| C3L-04025-28 | Head and Neck Squamous Cell Carcinoma | Head and Neck Cancer | HNSC | Primary | Head/Neck | Not Applicable | Head and Neck Squamous Cell Carcinoma | Head and Neck Squamous Cell Carcinoma | True | C3L-04025-28.svs | Negative | Negative |
| C3N-02700-23 | Head and Neck Squamous Cell Carcinoma | Head and Neck Cancer | HNSC | Primary | Head/Neck | Not Applicable | Head and Neck Squamous Cell Carcinoma | Head and Neck Squamous Cell Carcinoma | True | C3N-02700-23.svs | Negative | Negative |
| C3N-01946-24 | Head and Neck Squamous Cell Carcinoma | Head and Neck Cancer | HNSC | Primary | Head/Neck | Not Applicable | Head and Neck Squamous Cell Carcinoma | Head and Neck Squamous Cell Carcinoma | True | C3N-01946-24.svs | Negative | Negative |
Cross-Validation Performance
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Validation
Validation split counts
Encoder groups
External Inference Diagnostics
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Inference
Encoder groups
