GOLDMARK: Public Computational Pathology Portal

Stage Summary Pipeline status at a glance Pipeline

Features
Feature scan disabled for faster page loads
Inference
No inference results detected
Manifest
1137 rows, 13 columns
Tiling
Tiling directory present; assuming complete coverage
Training
Training directory present but no classification reports found

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

1137 rows · 13 columns

Target: DETAILEDTUMORTYPE Target: GENERALTUMORTYPE Target: ONCOTREE_CODE Target: SAMPLETYPE Target: PRIMARYSITE Target: METASTASISSITE Target: CANCER.TYPE.ORIGINAL Target: CANCER.TYPE Target: SCANNED_SLIDES_EXIST Target: KRAS Target: EGFR

DMP_ASSAY_ID	DetailedTumorType	GeneralTumorType	OncoTree_Code	SampleType	PrimarySite	MetastasisSite	Cancer.Type.Original	Cancer.Type	scanned_slides_exist	file_name	KRAS	EGFR
C3N-02142-26	Lung Adenocarcinoma	Non-Small Cell Lung Cancer	LUAD	Primary	Lung	Not Applicable	Lung Adenocarcinoma	Lung Adenocarcinoma	True	C3N-02142-26.svs	Negative	Negative
C3N-00559-21	Lung Adenocarcinoma	Non-Small Cell Lung Cancer	LUAD	Primary	Lung	Not Applicable	Lung Adenocarcinoma	Lung Adenocarcinoma	True	C3N-00559-21.svs	Negative	Negative
C3N-02155-27	Lung Adenocarcinoma	Non-Small Cell Lung Cancer	LUAD	Primary	Lung	Not Applicable	Lung Adenocarcinoma	Lung Adenocarcinoma	True	C3N-02155-27.svs	Negative	Negative
C3N-02950-26	Lung Adenocarcinoma	Non-Small Cell Lung Cancer	LUAD	Primary	Lung	Not Applicable	Lung Adenocarcinoma	Lung Adenocarcinoma	True	C3N-02950-26.svs	Negative	Negative
C3N-02149-21	Lung Adenocarcinoma	Non-Small Cell Lung Cancer	LUAD	Primary	Lung	Not Applicable	Lung Adenocarcinoma	Lung Adenocarcinoma	True	C3N-02149-21.svs	Negative	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference