CPTAC-PDA
Features
Inference
Manifest
Tiling
Training
Stage Summary
Pipeline status at a glance
Pipeline
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FeaturesFeature scan disabled for faster page loads
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InferenceNo inference results detected
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Manifest567 rows, 12 columns
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TilingTiling directory present; assuming complete coverage
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TrainingTraining directory present but no classification reports found
Case Summary
Track cohort coverage by encoder
Cohort
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Total cases567
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Tiling completed567
Cases
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Cases
Manifest Overview
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Manifest
Target: DETAILEDTUMORTYPE
Target: GENERALTUMORTYPE
Target: ONCOTREE_CODE
Target: SAMPLETYPE
Target: PRIMARYSITE
Target: METASTASISSITE
Target: CANCER.TYPE.ORIGINAL
Target: CANCER.TYPE
Target: SCANNED_SLIDES_EXIST
Target: KRAS
| DMP_ASSAY_ID | DetailedTumorType | GeneralTumorType | OncoTree_Code | SampleType | PrimarySite | MetastasisSite | Cancer.Type.Original | Cancer.Type | scanned_slides_exist | file_name | KRAS |
|---|---|---|---|---|---|---|---|---|---|---|---|
| C3L-01036-22 | Pancreatic Ductal Adenocarcinoma | Pancreatic Cancer | PAAD | Primary | Pancreas | Not Applicable | Pancreatic Ductal Adenocarcinoma | Pancreatic Ductal Adenocarcinoma | True | C3L-01036-22.svs | Negative |
| C3N-01389-21 | Pancreatic Ductal Adenocarcinoma | Pancreatic Cancer | PAAD | Primary | Pancreas | Not Applicable | Pancreatic Ductal Adenocarcinoma | Pancreatic Ductal Adenocarcinoma | True | C3N-01389-21.svs | Negative |
| C3N-04284-23 | Pancreatic Ductal Adenocarcinoma | Pancreatic Cancer | PAAD | Primary | Pancreas | Not Applicable | Pancreatic Ductal Adenocarcinoma | Pancreatic Ductal Adenocarcinoma | True | C3N-04284-23.svs | Negative |
| C3L-03350-22 | Pancreatic Ductal Adenocarcinoma | Pancreatic Cancer | PAAD | Primary | Pancreas | Not Applicable | Pancreatic Ductal Adenocarcinoma | Pancreatic Ductal Adenocarcinoma | True | C3L-03350-22.svs | Negative |
| C3N-03039-21 | Pancreatic Ductal Adenocarcinoma | Pancreatic Cancer | PAAD | Primary | Pancreas | Not Applicable | Pancreatic Ductal Adenocarcinoma | Pancreatic Ductal Adenocarcinoma | True | C3N-03039-21.svs | Negative |
Cross-Validation Performance
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Validation
Validation split counts
Encoder groups
External Inference Diagnostics
Interactive ROC/PR curves for each external inference experiment
Inference
Encoder groups
