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COAD

Last updated 2026-01-15 20:41 · Cached 2026-02-08 16:57

Features Inference Manifest Tiling Training

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (2953 files), h-optimus-0 (2953 files), prov-gigapath (2953 files), uni (2953 files), virchow (2953 files), virchow2 (2953 files)
Inference
825 prediction(s) · 195 positive label(s) · dataset tcga
Manifest
2959 rows, 16 columns
Tiling
Tiling manifest covers 2959 case(s)
Training
278 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

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2959 rows · 17 columns

Target: ATM_BINARY Target: ATM Target: BRAF_BINARY Target: BRAF Target: MSI_BINARY Target: MSI Target: PIK3CA_BINARY Target: PIK3CA Target: PTEN_BINARY Target: PTEN

slide_id	ATM_binary	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	ATM	BRAF	MSI	PIK3CA_binary	PIK3CA	PTEN_binary	PTEN
P-0000083-T02-IM6	0	P-0000083-T02-IM6	train	train	test	train	train	Negative	Negative	Negative	0	Negative	1	Positive
P-0000119-T01-IM3	0	P-0000119-T01-IM3	train	train	test	train	train	Negative	Negative	Negative	1	Positive	0	Negative
P-0000241-T01-IM3	0	P-0000241-T01-IM3	train	test	train	train	test	Negative	Negative	Negative	0	Negative	0	Negative
P-0000526-T01-IM3	1	P-0000526-T01-IM3	test	test	train	train	train	Positive	Negative	Negative	0	Negative	0	Negative
P-0000552-T01-IM3	0	P-0000552-T01-IM3	train	test	train	train	test	Negative	Negative	Negative	0	Negative	0	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

Training Runs Artifacts and metrics for each experiment Experiments

Gene Show archived Expand All

Model	Target	Aggregator	Split	Epoch 200	Macro AUC	Macro BER	Macro FPR	Macro FNR	Artifact
h-optimus-0	MSI	GMA PUB	split_1	120	0.946939192343604	0.1473360177404295	0.0173611111111111	0.2773109243697479	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_1	120	0.7758476186219074	0.3206032228505017	0.0372460496613995	0.6039603960396039	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_1	120	0.9533000700280112	0.1738542639277933	0.011574074074074	0.3361344537815126	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_1	120	0.6486210133428694	0.4283854457680531	0.0349887133182844	0.8217821782178217	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_3	120	0.7544719534162793	0.3760839512379037	0.0273972602739726	0.7247706422018348	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_2	120	0.9355830736427752	0.1531900934886009	0.0206659012629161	0.2857142857142857	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_3	120	0.9264657280719149	0.1684088269454123	0.0197444831591173	0.3170731707317073	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_5	120	0.6112799834574029	0.4749172870140612	0.0075268817204301	0.9423076923076924	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_5	120	0.5515508684863524	0.4946856906534325	0.0086021505376344	0.9807692307692308	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_5	120	0.786226914611974	0.3835018553368845	0.0193401592718998	0.7476635514018691	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_4	120	0.654142035792372	0.4581949955461981	0.0107296137339055	0.9056603773584906	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_3	120	0.683355326546856	0.3747538854677223	0.1073059360730593	0.6422018348623854	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_2	120	0.914865917664425	0.1844400934886009	0.0206659012629161	0.3482142857142857	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_5	120	0.9696375653024022	0.08752304041875	0.0069044879171461	0.168141592920354	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_4	120	0.9666607815442562	0.1086393596986817	0.0138888888888888	0.2033898305084746	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_1	120	0.6486210133428694	0.4283854457680531	0.0349887133182844	0.8217821782178217	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_4	120	0.6854523213911817	0.3761887969319947	0.0533484676503972	0.6990291262135923	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_5	120	0.7129597142036936	0.3934164779432872	0.0204778156996587	0.7663551401869159	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_4	120	0.6854523213911817	0.3761887969319947	0.0533484676503972	0.6990291262135923	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_3	120	0.9382123263741348	0.1637630662020906	0.0185830429732868	0.3089430894308943	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_1	120	0.5280637456761653	0.4968085982539943	0.012847965738758	0.9807692307692308	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_1	120	0.5532346400922419	0.4882638774501729	0.0149892933618843	0.9615384615384616	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_5	120	0.6112799834574029	0.4749172870140612	0.0075268817204301	0.9423076923076924	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_3	120	0.5192319359339926	0.4864911322777002	0.0107181136120042	0.9622641509433962	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_1	120	0.517954208532367	0.5021619173118103	0.0235546038543897	0.9807692307692308	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_2	120	0.9411852140396916	0.1794017549614564	0.0195177956371986	0.3392857142857143	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_3	120	0.9382123263741348	0.1637630662020906	0.0185830429732868	0.3089430894308943	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_2	120	0.9411852140396916	0.1794017549614564	0.0195177956371986	0.3392857142857143	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_2	120	0.6038995726495726	0.4943910256410256	0.0096153846153846	0.9791666666666666	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_2	120	0.7141037204058625	0.358184892897407	0.0563697857948139	0.66	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_1	120	0.5532346400922419	0.4882638774501729	0.0149892933618843	0.9615384615384616	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_1	120	0.9262322984749456	0.1718166433239962	0.0243055555555555	0.3193277310924369	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	120	0.7609402588114341	0.3887814853720135	0.0349887133182844	0.7425742574257426	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_1	120	0.9262322984749456	0.1718166433239962	0.0243055555555555	0.3193277310924369	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_4	120	0.6614300753097416	0.4859604016519556	0.009656652360515	0.9622641509433962	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_2	120	0.7412457722660655	0.335293122886133	0.040586245772266	0.63	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_1	120	0.946939192343604	0.1473360177404295	0.0173611111111111	0.2773109243697479	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_5	120	0.7129597142036936	0.3934164779432872	0.0204778156996587	0.7663551401869159	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_3	120	0.686633362657618	0.3611390390012987	0.0433789954337899	0.6788990825688074	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_3	120	0.7544719534162793	0.3760839512379037	0.0273972602739726	0.7247706422018348	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_5	120	0.9696375653024022	0.08752304041875	0.0069044879171461	0.168141592920354	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_2	120	0.9355830736427752	0.1531900934886009	0.0206659012629161	0.2857142857142857	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_1	120	0.9533000700280112	0.1738542639277933	0.011574074074074	0.3361344537815126	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_3	120	0.6018423021699124	0.4975328115836518	0.0139335476956055	0.981132075471698	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_5	120	0.9548204120288808	0.0996058942737558	0.0310701956271576	0.168141592920354	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_4	120	0.7013213140407524	0.3859581455318868	0.0340522133938706	0.7378640776699029	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_4	120	0.9666607815442562	0.1086393596986817	0.0138888888888888	0.2033898305084746	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_2	120	0.5853031517094016	0.4730235042735042	0.0085470085470085	0.9375	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_2	120	0.7884949267192785	0.2937485907553551	0.0574971815107102	0.53	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_4	120	0.6369139201554782	0.5048283261802575	0.009656652360515	1.0	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_4	120	0.7261111049888146	0.3671082066936292	0.0351872871736662	0.6990291262135923	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_4	120	0.9635710922787194	0.1092180634023854	0.0150462962962962	0.2033898305084746	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_1	120	0.7758476186219074	0.3206032228505017	0.0372460496613995	0.6039603960396039	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_2	120	0.7412457722660655	0.335293122886133	0.040586245772266	0.63	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_4	120	0.6369139201554782	0.5048283261802575	0.009656652360515	1.0	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_1	120	0.5280637456761653	0.4968085982539943	0.012847965738758	0.9807692307692308	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_1	120	0.517954208532367	0.5021619173118103	0.0235546038543897	0.9807692307692308	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_2	120	0.914865917664425	0.1844400934886009	0.0206659012629161	0.3482142857142857	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_3	120	0.683355326546856	0.3747538854677223	0.1073059360730593	0.6422018348623854	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_3	120	0.6018423021699124	0.4975328115836518	0.0139335476956055	0.981132075471698	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_3	120	0.9695570474868512	0.1173054587688734	0.0232288037166085	0.2113821138211382	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_3	120	0.686633362657618	0.3611390390012987	0.0433789954337899	0.6788990825688074	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_2	120	0.5853031517094016	0.4730235042735042	0.0085470085470085	0.9375	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_3	120	0.9695570474868512	0.1173054587688734	0.0232288037166085	0.2113821138211382	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_2	120	0.7141037204058625	0.358184892897407	0.0563697857948139	0.66	`cumulative_results.csv`
h-optimus-0	ATM	GMA PUB	split_4	120	0.654142035792372	0.4581949955461981	0.0107296137339055	0.9056603773584906	`cumulative_results.csv`
h-optimus-0	MSI	GMA PUB	split_4	120	0.9635710922787194	0.1092180634023854	0.0150462962962962	0.2033898305084746	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_2	120	0.7884949267192785	0.2937485907553551	0.0574971815107102	0.53	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_3	120	0.5192319359339926	0.4864911322777002	0.0107181136120042	0.9622641509433962	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_2	120	0.5110955306267807	0.4746260683760683	0.0117521367521367	0.9375	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_4	120	0.7261111049888146	0.3671082066936292	0.0351872871736662	0.6990291262135923	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_5	120	0.5515508684863524	0.4946856906534325	0.0086021505376344	0.9807692307692308	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_4	120	0.6614300753097416	0.4859604016519556	0.009656652360515	0.9622641509433962	`cumulative_results.csv`
gigapath_ft	ATM	GMA PUB	split_2	120	0.6038995726495726	0.4943910256410256	0.0096153846153846	0.9791666666666666	`cumulative_results.csv`
virchow	MSI	GMA PUB	split_3	120	0.9264657280719149	0.1684088269454123	0.0197444831591173	0.3170731707317073	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_3	120	0.5449857428866105	0.4880988493195009	0.0139335476956055	0.9622641509433962	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	120	0.7609402588114341	0.3887814853720135	0.0349887133182844	0.7425742574257426	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_3	120	0.5449857428866105	0.4880988493195009	0.0139335476956055	0.9622641509433962	`cumulative_results.csv`
virchow	ATM	GMA PUB	split_2	120	0.5110955306267807	0.4746260683760683	0.0117521367521367	0.9375	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_5	120	0.786226914611974	0.3835018553368845	0.0193401592718998	0.7476635514018691	`cumulative_results.csv`
gigapath_ft	MSI	GMA PUB	split_5	120	0.9548204120288808	0.0996058942737558	0.0310701956271576	0.168141592920354	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_4	120	0.7013213140407524	0.3859581455318868	0.0340522133938706	0.7378640776699029	`cumulative_results.csv`

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference