GOLDMARK: Public Computational Pathology Portal

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (921 files), h-optimus-0 (920 files), prov-gigapath (921 files), uni (921 files), virchow (921 files), virchow2 (921 files) Additional encoders: FoundationModel_ViT-B_p16_b1024 (921 files), FoundationModel_ViT-B_p16_b1024_adios (921 files), FoundationModel_ViT-L_p16_b2048 (921 files)
Inference
695 prediction(s) · 255 positive label(s) · dataset tcga
Manifest
923 rows, 12 columns
Tiling
Tiling manifest covers 923 case(s)
Training
80 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

923 rows · 11 columns

Target: EGFR_BINARY Target: EGFR Target: KRAS_BINARY Target: KRAS

slide_id	EGFR_binary	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	EGFR	KRAS
P-0000110-T01-IM3	0	P-0000110-T01-IM3	train	train	train	train	test	Negative	Negative
P-0000133-T01-IM3	0	P-0000133-T01-IM3	train	test	train	train	train	Negative	Negative
P-0000149-T01-IM3	0	P-0000149-T01-IM3	test	train	train	train	train	Negative	Negative
P-0000165-T01-IM3	1	P-0000165-T01-IM3	train	train	train	test	train	Positive	Negative
P-0000205-T01-IM3	1	P-0000205-T01-IM3	train	train	train	test	test	Positive	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference