PCPG
Features
Inference
Manifest
Tiling
Training
Stage Summary
Pipeline status at a glance
Pipeline
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FeaturesEncoders detected: gigapath_ft (18 files), h-optimus-0 (18 files), prov-gigapath (18 files), uni (18 files), virchow (18 files), virchow2 (18 files)
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Inference260 prediction(s) · 25 positive label(s) · dataset tcga
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Manifest18 rows, 11 columns
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TilingTiling manifest covers 18 case(s)
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Training30 training run(s)
Case Summary
Track cohort coverage by encoder
Cohort
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Total cases18
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Tiling completed18
Cases
Inspect case-level tiles and encoders
Cases
Manifest Overview
Preview the manifest and target distribution
Manifest
Target: HRAS_BINARY
Target: HRAS
| slide_id | HRAS_binary | DMP_ASSAY_ID | split_1 | split_2 | split_3 | split_4 | split_5 | HRAS |
|---|---|---|---|---|---|---|---|---|
| P-0001816-T01-IM3 | 0 | P-0001816-T01-IM3 | test | train | train | train | train | Negative |
| P-0010935-T01-IM5 | 1 | P-0010935-T01-IM5 | test | test | test | test | test | Positive |
| P-0018240-T01-IM6 | 0 | P-0018240-T01-IM6 | train | train | test | train | train | Negative |
| P-0023842-T01-IM6 | 0 | P-0023842-T01-IM6 | train | test | train | train | train | Negative |
| P-0032283-T01-IM6 | 0 | P-0032283-T01-IM6 | test | train | train | train | train | Negative |
Cross-Validation Performance
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Validation
Validation split counts
Encoder groups
External Inference Diagnostics
Interactive ROC/PR curves for each external inference experiment
Inference
Encoder groups