GOLDMARK: Public Computational Pathology Portal

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (882 files), h-optimus-0 (882 files), prov-gigapath (882 files), uni (882 files), virchow (882 files), virchow2 (882 files)
Inference
645 prediction(s) · 165 positive label(s) · dataset tcga
Manifest
886 rows, 14 columns
Tiling
Tiling manifest covers 886 case(s)
Training
120 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

886 rows · 15 columns

Target: BRAF_BINARY Target: BRAF Target: MAP2K1_BINARY Target: MAP2K1 Target: NRAS_BINARY Target: NRAS Target: PTEN_BINARY Target: PTEN

slide_id	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	BRAF	MAP2K1	NRAS	PTEN
P-0000237-T01-IM3	P-0000237-T01-IM3	train	train	train	train	test	Negative	Negative	Negative	Negative
P-0000293-T01-IM3	P-0000293-T01-IM3	train	train	train	train	test	Negative	Negative	Negative	Negative
P-0000372-T01-IM3	P-0000372-T01-IM3	train	train	test	train	test	Negative	Negative	Negative	Negative
P-0000480-T01-IM3	P-0000480-T01-IM3	train	train	test	test	test	Negative	Negative	Negative	Negative
P-0000582-T01-IM3	P-0000582-T01-IM3	test	train	train	train	train	Negative	Negative	Negative	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference