STAD
Features
Inference
Manifest
Tiling
Training
Stage Summary
Pipeline status at a glance
Pipeline
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FeaturesEncoders detected: gigapath_ft (741 files), h-optimus-0 (741 files), prov-gigapath (741 files), uni (741 files), virchow (741 files), virchow2 (741 files)
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Inference1120 prediction(s) · 180 positive label(s) · dataset tcga
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Manifest742 rows, 11 columns
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TilingTiling manifest covers 742 case(s)
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Training30 training run(s)
Case Summary
Track cohort coverage by encoder
Cohort
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Total cases742
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Tiling completed742
Cases
Inspect case-level tiles and encoders
Cases
Manifest Overview
Preview the manifest and target distribution
Manifest
Target: PIK3CA_BINARY
Target: PIK3CA
| slide_id | PIK3CA_binary | DMP_ASSAY_ID | split_1 | split_2 | split_3 | split_4 | split_5 | PIK3CA |
|---|---|---|---|---|---|---|---|---|
| P-0000076-T01-IM3 | 0 | P-0000076-T01-IM3 | train | test | train | train | test | Negative |
| P-0000086-T01-IM3 | 0 | P-0000086-T01-IM3 | train | train | train | test | test | Negative |
| P-0000121-T01-IM3 | 0 | P-0000121-T01-IM3 | train | train | train | test | train | Negative |
| P-0000144-T01-IM3 | 0 | P-0000144-T01-IM3 | test | test | train | train | test | Negative |
| P-0000180-T02-IM3 | 0 | P-0000180-T02-IM3 | train | test | train | train | train | Negative |
Cross-Validation Performance
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Validation
Validation split counts
Encoder groups
External Inference Diagnostics
Interactive ROC/PR curves for each external inference experiment
Inference
Encoder groups