THCA
Features
Inference
Manifest
Tiling
Training
Stage Summary
Pipeline status at a glance
Pipeline
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FeaturesEncoders detected: gigapath_ft (918 files), h-optimus-0 (918 files), prov-gigapath (918 files), uni (918 files), virchow (918 files), virchow2 (918 files) Additional encoders: FoundationModel_ViT-B_p16_b1024 (918 files), FoundationModel_ViT-B_p16_b1024_adios (918 files), FoundationModel_ViT-B_p16_b1024_cellvit (918 files), FoundationModel_ViT-L_p16_b2048 (918 files)
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Inference740 prediction(s) · 60 positive label(s) · dataset tcga
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Manifest920 rows, 12 columns
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TilingTiling manifest covers 920 case(s)
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Training93 training run(s)
Case Summary
Track cohort coverage by encoder
Cohort
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Total cases920
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Tiling completed920
Cases
Inspect case-level tiles and encoders
Cases
Manifest Overview
Preview the manifest and target distribution
Manifest
Target: BRAF_BINARY
Target: BRAF
Target: NRAS_BINARY
Target: NRAS
| slide_id | BRAF_binary | DMP_ASSAY_ID | split_1 | split_2 | split_3 | split_4 | split_5 | BRAF | NRAS_binary | NRAS |
|---|---|---|---|---|---|---|---|---|---|---|
| P-0000203-T01-IM3 | 0 | P-0000203-T01-IM3 | train | train | train | test | test | Negative | 0 | Negative |
| P-0000240-T01-IM3 | 1 | P-0000240-T01-IM3 | test | test | train | train | train | Positive | 0 | Negative |
| P-0000240-T02-IM7 | 1 | P-0000240-T02-IM7 | train | train | test | train | train | Positive | 0 | Negative |
| P-0000285-T01-IM3 | 0 | P-0000285-T01-IM3 | test | test | test | test | test | Negative | 0 | Negative |
| P-0000320-T02-IM3 | 1 | P-0000320-T02-IM3 | train | test | train | train | train | Positive | 0 | Negative |
Cross-Validation Performance
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Validation
Validation split counts
Encoder groups
External Inference Diagnostics
Interactive ROC/PR curves for each external inference experiment
Inference
Encoder groups
