GOLDMARK: Public Computational Pathology Portal

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (2058 files), h-optimus-0 (2058 files), prov-gigapath (2058 files), uni (2058 files), virchow (2058 files), virchow2 (2058 files)
Inference
740 prediction(s) · 105 positive label(s) · dataset tcga
Manifest
2062 rows, 15 columns
Tiling
Tiling manifest covers 2060 case(s)
Training
150 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

2062 rows · 17 columns

Target: ATM_BINARY Target: ATM Target: FBXW7_BINARY Target: FBXW7 Target: PIK3CA_BINARY Target: PIK3CA Target: POLE_BINARY Target: POLE Target: PTEN_BINARY Target: PTEN

slide_id	ATM_binary	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	ATM	FBXW7_binary	FBXW7	PIK3CA_binary	PIK3CA	POLE	PTEN_binary	PTEN
P-0000025-T02-IM5	0.0	P-0000025-T02-IM5	test	train	test	train	train	Negative	0	Negative	1	Positive	Negative	0	Negative
P-0000025-T03-IM6	0.0	P-0000025-T03-IM6	train	test	train	train	train	Negative	0	Negative	1	Positive	Negative	0	Negative
P-0000061-T01-IM3	0.0	P-0000061-T01-IM3	train	train	train	train	test	Negative	0	Negative	1	Positive	Negative	0	Negative
P-0000064-T02-IM3	1.0	P-0000064-T02-IM3	train	test	test	train	train	Positive	0	Negative	0	Negative	Negative	0	Negative
P-0000069-T01-IM3	1.0	P-0000069-T01-IM3	test	test	test	train	train	Positive	1	Positive	1	Positive	Negative	1	Positive

Cross-Validation Performance Compare experiments across validation splits Validation

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference