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TCGA-BRCA

Last updated 2026-02-04 16:27 · Cached 2026-02-08 16:58

Features Inference Manifest Tiling Training

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (1117 files, 1000 with labels), h-optimus-0 (1117 files, 1000 with labels), prov-gigapath (1117 files, 1000 with labels), uni (1117 files, 1000 with labels), virchow (1117 files, 1000 with labels), virchow2 (1117 files, 1000 with labels)
Inference
1495 prediction(s) · 530 positive label(s) · dataset tcga
Manifest
1000 rows, 13 columns
Tiling
Tiling manifest covers 1124 case(s), 1000 with labels
Training
90 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

Download CSV

1000 rows · 9 columns

Target: PIK3CA_BINARY Target: PIK3CA

slide_id	PIK3CA_binary	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	PIK3CA
TCGA-3C-AALI_TCGA-3C-AALI-01Z-00-DX2	0	TCGA-3C-AALI_TCGA-3C-AALI-01Z-00-DX2	train	test	train	test	test	Negative
TCGA-3C-AALJ_TCGA-3C-AALJ-01Z-00-DX1	0	TCGA-3C-AALJ_TCGA-3C-AALJ-01Z-00-DX1	train	train	train	test	train	Negative
TCGA-3C-AALK_TCGA-3C-AALK-01Z-00-DX1	1	TCGA-3C-AALK_TCGA-3C-AALK-01Z-00-DX1	train	train	train	test	train	Positive
TCGA-4H-AAAK_TCGA-4H-AAAK-01Z-00-DX1	0	TCGA-4H-AAAK_TCGA-4H-AAAK-01Z-00-DX1	test	train	train	test	train	Negative
TCGA-5L-AAT0_TCGA-5L-AAT0-01Z-00-DX1	1	TCGA-5L-AAT0_TCGA-5L-AAT0-01Z-00-DX1	test	train	train	train	test	Positive

Cross-Validation Performance Compare experiments across validation splits Validation

Training Runs Artifacts and metrics for each experiment Experiments

Gene Show archived Expand All

Model	Target	Aggregator	Split	Epoch 200	Macro AUC	Macro BER	Macro FPR	Macro FNR	Artifact
virchow	PIK3CA	GMA PUB	split_3	120	0.5724115078746297	0.4502377982223608	0.2971698113207547	0.6033057851239669	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_2	120	0.668589281422735	0.3920932468156692	0.3105022831050228	0.4736842105263157	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_4	120	0.6400678101316314	0.3929397686477862	0.2293577981651376	0.5565217391304348	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_5	120	0.6371000323206205	0.3943721719457013	0.2262443438914027	0.5625	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_4	120	0.6532508974870364	0.3894495412844037	0.1788990825688073	0.6	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_3	120	0.6860673631685639	0.3711601434585997	0.2547169811320754	0.4876033057851239	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_4	120	0.6740725967291583	0.3650378938970882	0.2431192660550458	0.4869565217391304	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_2	120	0.7097853080189057	0.332732516222062	0.1917808219178082	0.4736842105263157	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_3	120	0.6876461874317792	0.3516879775456105	0.240566037735849	0.4628099173553719	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_4	120	0.6400678101316314	0.3929397686477862	0.2293577981651376	0.5565217391304348	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_1	120	0.6518364105618424	0.3783005757395274	0.365296803652968	0.391304347826087	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_3	120	0.6478637143302666	0.4177841883673787	0.2735849056603773	0.5619834710743802	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_4	120	0.6789788591942562	0.3711009174311926	0.1422018348623853	0.6	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_5	120	0.6159906270200388	0.4146735617323852	0.2579185520361991	0.5714285714285714	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_1	120	0.6292833035537027	0.3877506452253325	0.3059360730593607	0.4695652173913043	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_3	120	0.6337907375643225	0.4189536878216123	0.2924528301886792	0.5454545454545454	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_1	120	0.6518364105618424	0.3783005757395274	0.365296803652968	0.391304347826087	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_5	120	0.6065166451195863	0.421763897866839	0.3167420814479638	0.5267857142857143	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_4	120	0.6799561228560032	0.3819505384922217	0.2247706422018348	0.5391304347826087	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_1	120	0.6187810204486798	0.4268810800079412	0.3059360730593607	0.5478260869565217	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_5	120	0.6340295733678086	0.3862920168067227	0.3529411764705882	0.4196428571428571	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_3	120	0.6876461874317792	0.3516879775456105	0.240566037735849	0.4628099173553719	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_5	120	0.6152028118939883	0.4122293148028442	0.2262443438914027	0.5982142857142857	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_4	120	0.6799561228560032	0.3819505384922217	0.2247706422018348	0.5391304347826087	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_1	120	0.6363708556680564	0.3980742505459599	0.2831050228310502	0.5130434782608696	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_3	120	0.6469670980820209	0.3906518010291595	0.2358490566037736	0.5454545454545454	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_3	120	0.6860673631685639	0.3711601434585997	0.2547169811320754	0.4876033057851239	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_5	120	0.6470588235294117	0.4032401422107304	0.2171945701357466	0.5892857142857143	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_5	120	0.6065166451195863	0.421763897866839	0.3167420814479638	0.5267857142857143	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_5	120	0.6340295733678086	0.3862920168067227	0.3529411764705882	0.4196428571428571	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_1	120	0.5922970021838395	0.4535239229700218	0.4200913242009132	0.4869565217391304	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_3	120	0.6478637143302666	0.4177841883673787	0.2735849056603773	0.5619834710743802	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_3	120	0.5724115078746297	0.4502377982223608	0.2971698113207547	0.6033057851239669	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_4	120	0.6451336258476267	0.3925608296769046	0.2981651376146789	0.4869565217391304	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_2	120	0.668589281422735	0.3920932468156692	0.3105022831050228	0.4736842105263157	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_2	120	0.6357446126732356	0.4027877913962989	0.2968036529680365	0.5087719298245614	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_2	120	0.677501401906593	0.3766522470559961	0.3059360730593607	0.4473684210526316	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_5	120	0.6159906270200388	0.4146735617323852	0.2579185520361991	0.5714285714285714	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_3	120	0.6337907375643225	0.4189536878216123	0.2924528301886792	0.5454545454545454	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_4	120	0.6532508974870364	0.3894495412844037	0.1788990825688073	0.6	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_1	120	0.6278340281913838	0.4149295215405996	0.3515981735159817	0.4782608695652174	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_4	120	0.6789788591942562	0.3711009174311926	0.1422018348623853	0.6	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_2	120	0.6603781142353602	0.3768324921893775	0.3150684931506849	0.4385964912280701	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_4	120	0.6740725967291583	0.3650378938970882	0.2431192660550458	0.4869565217391304	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_3	120	0.6469670980820209	0.3906518010291595	0.2358490566037736	0.5454545454545454	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_1	120	0.6292833035537027	0.3877506452253325	0.3059360730593607	0.4695652173913043	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_5	120	0.6152028118939883	0.4122293148028442	0.2262443438914027	0.5982142857142857	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_5	120	0.6371000323206205	0.3943721719457013	0.2262443438914027	0.5625	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_4	120	0.6451336258476267	0.3925608296769046	0.2981651376146789	0.4869565217391304	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_2	120	0.6456380677721701	0.420451814467676	0.1917808219178082	0.6491228070175439	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_2	120	0.6357446126732356	0.4027877913962989	0.2968036529680365	0.5087719298245614	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_1	120	0.6187810204486798	0.4268810800079412	0.3059360730593607	0.5478260869565217	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_5	120	0.6470588235294117	0.4032401422107304	0.2171945701357466	0.5892857142857143	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_1	120	0.6278340281913838	0.4149295215405996	0.3515981735159817	0.4782608695652174	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_2	120	0.7097853080189057	0.332732516222062	0.1917808219178082	0.4736842105263157	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_2	120	0.6456380677721701	0.420451814467676	0.1917808219178082	0.6491228070175439	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_2	120	0.6603781142353602	0.3768324921893775	0.3150684931506849	0.4385964912280701	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_1	120	0.5922970021838395	0.4535239229700218	0.4200913242009132	0.4869565217391304	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_2	120	0.677501401906593	0.3766522470559961	0.3059360730593607	0.4473684210526316	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_1	120	0.6363708556680564	0.3980742505459599	0.2831050228310502	0.5130434782608696	`cumulative_results.csv`

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference