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TCGA-HNSC

Last updated 2026-02-04 16:27 · Cached 2026-02-08 16:59

Features Inference Manifest Tiling Training

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (472 files, 431 with labels), h-optimus-0 (472 files, 431 with labels), prov-gigapath (472 files, 431 with labels), uni (472 files, 431 with labels), virchow (472 files, 431 with labels), virchow2 (472 files, 431 with labels)
Inference
640 prediction(s) · 35 positive label(s) · dataset tcga
Manifest
431 rows, 15 columns
Tiling
Tiling manifest covers 472 case(s), 431 with labels
Training
180 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

Download CSV

431 rows · 11 columns

Target: HRAS_BINARY Target: HRAS Target: PIK3CA_BINARY Target: PIK3CA

slide_id	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	HRAS	PIK3CA_binary	PIK3CA
TCGA-4P-AA8J_TCGA-4P-AA8J-01Z-00-DX1	TCGA-4P-AA8J_TCGA-4P-AA8J-01Z-00-DX1	train	test	train	train	train	Negative	0	Negative
TCGA-BA-4074_TCGA-BA-4074-01Z-00-DX1	TCGA-BA-4074_TCGA-BA-4074-01Z-00-DX1	train	train	train	test	train	Negative	0	Negative
TCGA-BA-4075_TCGA-BA-4075-01Z-00-DX1	TCGA-BA-4075_TCGA-BA-4075-01Z-00-DX1	test	train	train	test	train	Negative	0	Negative
TCGA-BA-4076_TCGA-BA-4076-01Z-00-DX1	TCGA-BA-4076_TCGA-BA-4076-01Z-00-DX1	train	train	test	train	train	Negative	0	Negative
TCGA-BA-4077_TCGA-BA-4077-01Z-00-DX1	TCGA-BA-4077_TCGA-BA-4077-01Z-00-DX1	train	train	test	test	train	Negative	1	Positive

Cross-Validation Performance Compare experiments across validation splits Validation

Training Runs Artifacts and metrics for each experiment Experiments

Gene Show archived Expand All

Model	Target	Aggregator	Split	Epoch 200	Macro AUC	Macro BER	Macro FPR	Macro FNR	Artifact
virchow	HRAS	GMA PUB	split_2	120	0.5967153284671532	0.375	0.0	0.75	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_1	120	0.5149769585253456	0.4769585253456221	0.0967741935483871	0.8571428571428571	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_3	120	0.7965686274509804	0.4481209150326797	0.0073529411764705	0.8888888888888888	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_4	120	0.506198347107438	0.4955234159779614	0.0743801652892562	0.9166666666666666	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_1	120	0.511136712749616	0.5205453149001535	0.0887096774193548	0.9523809523809524	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_2	120	0.5883256528417818	0.444700460829493	0.032258064516129	0.8571428571428571	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_5	120	0.8123456790123457	0.4481481481481481	0.0074074074074074	0.8888888888888888	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_2	120	0.4216589861751152	0.5205453149001535	0.0887096774193548	0.9523809523809524	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_2	120	0.5061443932411674	0.5245775729646697	0.0967741935483871	0.9523809523809524	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_5	120	0.791769547325103	0.4481481481481481	0.0074074074074074	0.8888888888888888	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_5	120	0.501117734724292	0.5201192250372578	0.1311475409836065	0.9090909090909092	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_2	120	0.5967153284671532	0.375	0.0	0.75	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_5	120	0.6020864381520119	0.4336810730253353	0.0491803278688524	0.8181818181818182	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_2	120	0.5883256528417818	0.444700460829493	0.032258064516129	0.8571428571428571	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_2	120	0.4216589861751152	0.5205453149001535	0.0887096774193548	0.9523809523809524	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_5	120	0.7168724279835391	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_2	120	0.5061443932411674	0.5245775729646697	0.0967741935483871	0.9523809523809524	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_5	120	0.7794238683127572	0.3925925925925926	0.0074074074074074	0.7777777777777778	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_1	120	0.7928832116788322	0.5	0.0	1.0	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_4	120	0.534435261707989	0.5289256198347108	0.0578512396694214	1.0	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_5	120	0.7168724279835391	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_1	120	0.511136712749616	0.5205453149001535	0.0887096774193548	0.9523809523809524	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_5	120	0.6005961251862891	0.5018628912071535	0.0491803278688524	0.9545454545454546	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_5	120	0.791769547325103	0.4481481481481481	0.0074074074074074	0.8888888888888888	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_2	120	0.7773722627737227	0.375	0.0	0.75	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_1	120	0.4658218125960061	0.5168970814132104	0.1290322580645161	0.9047619047619048	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_1	120	0.4658218125960061	0.5168970814132104	0.1290322580645161	0.9047619047619048	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_1	120	0.6395985401459854	0.5145985401459854	0.0291970802919708	1.0	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_5	120	0.7506172839506173	0.3888888888888889	0.0	0.7777777777777778	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_2	120	0.7016423357664234	0.448448905109489	0.0218978102189781	0.875	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_2	120	0.4792626728110599	0.504416282642089	0.0564516129032258	0.9523809523809524	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_4	120	0.7033492822966507	0.5	0.0	1.0	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_1	120	0.8385036496350364	0.4447992700729927	0.0145985401459854	0.875	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_3	120	0.4791666666666667	0.4538567493112947	0.0743801652892562	0.8333333333333334	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_1	120	0.5149769585253456	0.4769585253456221	0.0967741935483871	0.8571428571428571	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_4	120	0.7190704032809296	0.4620642515379357	0.0150375939849624	0.9090909090909092	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_3	120	0.7124183006535948	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_3	120	0.7434640522875815	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_4	120	0.5637052341597796	0.4831267217630853	0.0495867768595041	0.9166666666666666	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_4	120	0.7190704032809296	0.4620642515379357	0.0150375939849624	0.9090909090909092	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_1	120	0.7928832116788322	0.5	0.0	1.0	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_3	120	0.46849173553719	0.4536845730027548	0.1157024793388429	0.7916666666666666	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_1	120	0.4792626728110599	0.4648617511520737	0.0725806451612903	0.8571428571428571	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_4	120	0.6411483253588517	0.4203691045796309	0.0225563909774436	0.8181818181818182	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_4	120	0.496900826446281	0.4414600550964187	0.0495867768595041	0.8333333333333334	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_3	120	0.7124183006535948	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_1	120	0.8147810218978102	0.5	0.0	1.0	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_3	120	0.7434640522875815	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_4	120	0.5010252904989747	0.4733424470266575	0.037593984962406	0.9090909090909092	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_4	120	0.7887901572112098	0.5	0.0	1.0	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_4	120	0.5981404958677685	0.4831267217630853	0.0495867768595041	0.9166666666666666	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_2	120	0.7290145985401459	0.375	0.0	0.75	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_3	120	0.5187908496732027	0.5	0.0	1.0	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_2	120	0.7864963503649636	0.4411496350364963	0.0072992700729927	0.875	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_2	120	0.7864963503649636	0.4411496350364963	0.0072992700729927	0.875	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_3	120	0.4542011019283747	0.5120523415977961	0.1074380165289256	0.9166666666666666	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_2	120	0.4654377880184331	0.4685099846390169	0.032258064516129	0.9047619047619048	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_5	120	0.6508941877794338	0.4500745156482861	0.081967213114754	0.8181818181818182	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_5	120	0.8123456790123457	0.4481481481481481	0.0074074074074074	0.8888888888888888	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_3	120	0.4814049586776859	0.4829545454545454	0.0909090909090909	0.875	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_4	120	0.5082644628099173	0.4455922865013774	0.0578512396694214	0.8333333333333334	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_4	120	0.7887901572112098	0.5	0.0	1.0	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_2	120	0.4112903225806452	0.504416282642089	0.0564516129032258	0.9523809523809524	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_1	120	0.4792626728110599	0.4648617511520737	0.0725806451612903	0.8571428571428571	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_3	120	0.7410130718954248	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_3	120	0.4791666666666667	0.4538567493112947	0.0743801652892562	0.8333333333333334	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_5	120	0.690387481371088	0.4273472429210134	0.081967213114754	0.7727272727272727	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_1	120	0.5652841781874041	0.4809907834101382	0.1048387096774193	0.8571428571428571	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_2	120	0.4654377880184331	0.4685099846390169	0.032258064516129	0.9047619047619048	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_2	120	0.8056569343065694	0.5145985401459854	0.0291970802919708	1.0	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_5	120	0.5563786008230452	0.4518518518518518	0.0148148148148148	0.8888888888888888	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_4	120	0.7033492822966507	0.5	0.0	1.0	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_3	120	0.7410130718954248	0.4444444444444444	0.0	0.8888888888888888	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_4	120	0.5010252904989747	0.4733424470266575	0.037593984962406	0.9090909090909092	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_2	120	0.7290145985401459	0.375	0.0	0.75	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_3	120	0.4888085399449036	0.4788223140495867	0.0826446280991735	0.875	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_5	120	0.6508941877794338	0.4500745156482861	0.081967213114754	0.8181818181818182	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_4	120	0.534435261707989	0.5289256198347108	0.0578512396694214	1.0	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_1	120	0.7454379562043796	0.4411496350364963	0.0072992700729927	0.875	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_1	120	0.8147810218978102	0.5	0.0	1.0	`cumulative_results.csv`
prov-gigapath	HRAS	GMA PUB	split_1	120	0.8385036496350364	0.4447992700729927	0.0145985401459854	0.875	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_1	120	0.7819343065693432	0.5072992700729927	0.0145985401459854	1.0	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_4	120	0.7949419002050582	0.4545454545454545	0.0	0.9090909090909092	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_1	120	0.7819343065693432	0.5072992700729927	0.0145985401459854	1.0	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_1	120	0.6395985401459854	0.5145985401459854	0.0291970802919708	1.0	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_3	120	0.7965686274509804	0.4481209150326797	0.0073529411764705	0.8888888888888888	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_1	120	0.4800307219662058	0.5165130568356374	0.0806451612903225	0.9523809523809524	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_1	120	0.4800307219662058	0.5165130568356374	0.0806451612903225	0.9523809523809524	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_3	120	0.5187908496732027	0.5	0.0	1.0	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_4	120	0.5637052341597796	0.4831267217630853	0.0495867768595041	0.9166666666666666	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_2	120	0.4112903225806452	0.504416282642089	0.0564516129032258	0.9523809523809524	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_3	120	0.676470588235294	0.4481209150326797	0.0073529411764705	0.8888888888888888	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_2	120	0.7016423357664234	0.448448905109489	0.0218978102189781	0.875	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_3	120	0.4542011019283747	0.5120523415977961	0.1074380165289256	0.9166666666666666	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_5	120	0.7506172839506173	0.3888888888888889	0.0	0.7777777777777778	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_3	120	0.4814049586776859	0.4829545454545454	0.0909090909090909	0.875	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_4	120	0.506198347107438	0.4955234159779614	0.0743801652892562	0.9166666666666666	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_2	120	0.8056569343065694	0.5145985401459854	0.0291970802919708	1.0	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_5	120	0.7794238683127572	0.3925925925925926	0.0074074074074074	0.7777777777777778	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_5	120	0.6020864381520119	0.4336810730253353	0.0491803278688524	0.8181818181818182	`cumulative_results.csv`
gigapath_ft	HRAS	GMA PUB	split_4	120	0.7949419002050582	0.4545454545454545	0.0	0.9090909090909092	`cumulative_results.csv`
virchow	HRAS	GMA PUB	split_5	120	0.5563786008230452	0.4518518518518518	0.0148148148148148	0.8888888888888888	`cumulative_results.csv`
h-optimus-0	PIK3CA	GMA PUB	split_5	120	0.690387481371088	0.4273472429210134	0.081967213114754	0.7727272727272727	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_4	120	0.496900826446281	0.4414600550964187	0.0495867768595041	0.8333333333333334	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_1	120	0.5652841781874041	0.4809907834101382	0.1048387096774193	0.8571428571428571	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_3	120	0.4888085399449036	0.4788223140495867	0.0826446280991735	0.875	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_3	120	0.4669421487603306	0.4328512396694215	0.1157024793388429	0.75	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_4	120	0.5981404958677685	0.4831267217630853	0.0495867768595041	0.9166666666666666	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_1	120	0.7454379562043796	0.4411496350364963	0.0072992700729927	0.875	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_5	120	0.5387481371087929	0.5182563338301044	0.081967213114754	0.9545454545454546	`cumulative_results.csv`
uni	HRAS	GMA PUB	split_2	120	0.7773722627737227	0.375	0.0	0.75	`cumulative_results.csv`
uni	PIK3CA	GMA PUB	split_3	120	0.4669421487603306	0.4328512396694215	0.1157024793388429	0.75	`cumulative_results.csv`
prov-gigapath	PIK3CA	GMA PUB	split_2	120	0.4792626728110599	0.504416282642089	0.0564516129032258	0.9523809523809524	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_5	120	0.501117734724292	0.5201192250372578	0.1311475409836065	0.9090909090909092	`cumulative_results.csv`
h-optimus-0	HRAS	GMA PUB	split_3	120	0.676470588235294	0.4481209150326797	0.0073529411764705	0.8888888888888888	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_5	120	0.6005961251862891	0.5018628912071535	0.0491803278688524	0.9545454545454546	`cumulative_results.csv`
virchow2	PIK3CA	GMA PUB	split_4	120	0.5082644628099173	0.4455922865013774	0.0578512396694214	0.8333333333333334	`cumulative_results.csv`
virchow	PIK3CA	GMA PUB	split_5	120	0.5387481371087929	0.5182563338301044	0.081967213114754	0.9545454545454546	`cumulative_results.csv`
virchow2	HRAS	GMA PUB	split_4	120	0.6411483253588517	0.4203691045796309	0.0225563909774436	0.8181818181818182	`cumulative_results.csv`
gigapath_ft	PIK3CA	GMA PUB	split_3	120	0.46849173553719	0.4536845730027548	0.1157024793388429	0.7916666666666666	`cumulative_results.csv`

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference