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TCGA-THCA

Last updated 2026-02-04 16:27 · Cached 2026-02-08 17:00

Features Inference Manifest Tiling Training

Stage Summary Pipeline status at a glance Pipeline

Features
Encoders detected: gigapath_ft (519 files, 495 with labels), h-optimus-0 (519 files, 495 with labels), prov-gigapath (519 files, 495 with labels), uni (519 files, 495 with labels), virchow (519 files, 495 with labels), virchow2 (519 files, 495 with labels)
Inference
740 prediction(s) · 60 positive label(s) · dataset tcga
Manifest
495 rows, 15 columns
Tiling
Tiling manifest covers 519 case(s), 495 with labels
Training
182 training run(s)

Case Summary Track cohort coverage by encoder Cohort

Cases Inspect case-level tiles and encoders Cases

Manifest Overview Preview the manifest and target distribution Manifest

Download CSV

495 rows · 11 columns

Target: BRAF_BINARY Target: BRAF Target: NRAS_BINARY Target: NRAS

slide_id	BRAF_binary	DMP_ASSAY_ID	split_1	split_2	split_3	split_4	split_5	BRAF	NRAS
TCGA-4C-A93U_TCGA-4C-A93U-01Z-00-DX2	1	TCGA-4C-A93U_TCGA-4C-A93U-01Z-00-DX2	train	test	test	train	test	Positive	Negative
TCGA-BJ-A0YZ_TCGA-BJ-A0YZ-01Z-00-DX1	0	TCGA-BJ-A0YZ_TCGA-BJ-A0YZ-01Z-00-DX1	train	test	test	train	train	Negative	Negative
TCGA-BJ-A0Z0_TCGA-BJ-A0Z0-01Z-00-DX1	0	TCGA-BJ-A0Z0_TCGA-BJ-A0Z0-01Z-00-DX1	train	train	train	test	train	Negative	Negative
TCGA-BJ-A0Z2_TCGA-BJ-A0Z2-01Z-00-DX1	0	TCGA-BJ-A0Z2_TCGA-BJ-A0Z2-01Z-00-DX1	train	train	test	train	train	Negative	Negative
TCGA-BJ-A0Z3_TCGA-BJ-A0Z3-01Z-00-DX2	1	TCGA-BJ-A0Z3_TCGA-BJ-A0Z3-01Z-00-DX2	test	train	test	train	train	Positive	Negative

Cross-Validation Performance Compare experiments across validation splits Validation

Training Runs Artifacts and metrics for each experiment Experiments

Gene Show archived Expand All

Model	Target	Aggregator	Split	Epoch 200	Macro AUC	Macro BER	Macro FPR	Macro FNR	Artifact
h-optimus-0	NRAS	GMA PUB	split_5	120	0.8092105263157894	0.3399122807017544	0.0131578947368421	0.6666666666666666	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_1	120	0.7403846153846154	0.3944838056680162	0.0197368421052631	0.7692307692307693	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_3	120	0.8604441776710684	0.2054321728691476	0.3088235294117647	0.1020408163265306	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_2	120	0.910922181372549	0.1467524509803921	0.15625	0.1372549019607843	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_5	120	0.8103070175438596	0.4649122807017544	0.0131578947368421	0.9166666666666666	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_1	120	0.771255060728745	0.4076417004048583	0.0460526315789473	0.7692307692307693	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_1	120	0.8989145183175035	0.1328207447610432	0.1343283582089552	0.1313131313131313	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_5	120	0.8103070175438596	0.4649122807017544	0.0131578947368421	0.9166666666666666	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_3	120	0.8891056422569027	0.148859543817527	0.2058823529411764	0.0918367346938775	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_1	120	0.8513493140358812	0.1778230061812151	0.1940298507462686	0.1616161616161616	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_4	120	0.7621457489878543	0.4493927125506073	0.0526315789473684	0.8461538461538461	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_4	120	0.7621457489878543	0.4493927125506073	0.0526315789473684	0.8461538461538461	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_4	120	0.8625682231655549	0.1684354154032747	0.2647058823529412	0.0721649484536082	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_2	120	0.910922181372549	0.1467524509803921	0.15625	0.1372549019607843	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_5	120	0.908924763935425	0.1826073713067316	0.2835820895522388	0.0816326530612244	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_2	120	0.8066801619433198	0.305414979757085	0.0723684210526315	0.5384615384615384	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_4	120	0.729757085020243	0.4010627530364373	0.0328947368421052	0.7692307692307693	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_1	120	0.8259109311740891	0.3658906882591093	0.0394736842105263	0.6923076923076923	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_1	120	0.8989145183175035	0.1328207447610432	0.1343283582089552	0.1313131313131313	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_4	120	0.900166767738023	0.142662219526986	0.2647058823529412	0.0206185567010309	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_1	120	0.8830845771144278	0.1328207447610432	0.1343283582089552	0.1313131313131313	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_2	120	0.9037990196078431	0.1447610294117647	0.171875	0.1176470588235294	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_2	120	0.8532388663967612	0.311993927125506	0.0855263157894736	0.5384615384615384	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_3	120	0.8294567827130852	0.198079231692677	0.2941176470588235	0.1020408163265306	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_4	120	0.7348178137651823	0.4076417004048583	0.0460526315789473	0.7692307692307693	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_5	120	0.8697916666666666	0.3081140350877193	0.0328947368421052	0.5833333333333334	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_5	120	0.8810307017543859	0.2763157894736842	0.0526315789473684	0.5	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_1	120	0.8522267206477733	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_5	120	0.8697916666666666	0.3081140350877193	0.0328947368421052	0.5833333333333334	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_5	120	0.7475328947368421	0.4013157894736842	0.0526315789473684	0.75	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_4	120	0.7130566801619433	0.4714068825910931	0.0197368421052631	0.9230769230769232	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_5	120	0.8092105263157894	0.3399122807017544	0.0131578947368421	0.6666666666666666	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_4	120	0.8625682231655549	0.1684354154032747	0.2647058823529412	0.0721649484536082	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_3	120	0.8294567827130852	0.198079231692677	0.2941176470588235	0.1020408163265306	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_4	120	0.8193602183141298	0.2486355366889023	0.3529411764705882	0.1443298969072164	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_5	120	0.9182911970758452	0.1354706061529089	0.1791044776119403	0.0918367346938775	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_4	120	0.7742914979757085	0.3944838056680162	0.0197368421052631	0.7692307692307693	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_4	120	0.7348178137651823	0.4076417004048583	0.0460526315789473	0.7692307692307693	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_2	120	0.7165991902834008	0.4109311740890689	0.0526315789473684	0.7692307692307693	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_2	120	0.8066801619433198	0.305414979757085	0.0723684210526315	0.5384615384615384	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_4	120	0.8724226804123711	0.1560036385688296	0.1470588235294117	0.1649484536082474	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_1	120	0.8723051409618574	0.1775968641640283	0.2238805970149253	0.1313131313131313	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_3	120	0.8604441776710684	0.2054321728691476	0.3088235294117647	0.1020408163265306	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_2	120	0.9575674019607844	0.1007965686274509	0.09375	0.1078431372549019	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_4	120	0.7742914979757085	0.3944838056680162	0.0197368421052631	0.7692307692307693	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_4	120	0.874620982413584	0.1935263796240145	0.1911764705882352	0.1958762886597938	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_3	120	0.6712393566698203	0.4160359508041627	0.0463576158940397	0.7857142857142857	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_5	120	0.8339171489491319	0.2100974718245507	0.3283582089552239	0.0918367346938775	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_1	120	0.5668016194331984	0.4812753036437247	0.0394736842105263	0.9230769230769232	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_3	120	0.8891056422569027	0.148859543817527	0.2058823529411764	0.0918367346938775	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_1	120	0.8830845771144278	0.1328207447610432	0.1343283582089552	0.1313131313131313	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_2	120	0.811740890688259	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_5	120	0.8926286932683523	0.180246725555894	0.2686567164179104	0.0918367346938775	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_5	120	0.8339171489491319	0.2100974718245507	0.3283582089552239	0.0918367346938775	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	120	0.8768279813055933	0.160033167495854	0.208955223880597	0.1111111111111111	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_3	120	0.6882686849574267	0.412724692526017	0.0397350993377483	0.7857142857142857	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_1	120	0.8522267206477733	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_4	120	0.7130566801619433	0.4714068825910931	0.0197368421052631	0.9230769230769232	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_4	120	0.8898574893875075	0.1713917525773196	0.25	0.0927835051546391	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_3	120	0.6882686849574267	0.412724692526017	0.0397350993377483	0.7857142857142857	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_3	120	0.8051087984862819	0.3770104068117313	0.0397350993377483	0.7142857142857143	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_4	120	0.8898574893875075	0.1713917525773196	0.25	0.0927835051546391	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_1	120	0.8750188451680989	0.175410824664556	0.1791044776119403	0.1717171717171717	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_4	120	0.900166767738023	0.142662219526986	0.2647058823529412	0.0206185567010309	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_5	120	0.9182911970758452	0.1354706061529089	0.1791044776119403	0.0918367346938775	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_3	120	0.8837034813925569	0.2003301320528211	0.3088235294117647	0.0918367346938775	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_5	120	0.8810307017543859	0.2763157894736842	0.0526315789473684	0.5	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_2	120	0.8312246963562753	0.2988360323886639	0.0592105263157894	0.5384615384615384	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_3	120	0.8866296518607443	0.1929771908763505	0.2941176470588235	0.0918367346938775	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_3	120	0.8051087984862819	0.3770104068117313	0.0397350993377483	0.7142857142857143	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_3	120	0.8271308523409364	0.2178871548619448	0.3235294117647059	0.1122448979591836	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_5	120	0.908924763935425	0.1826073713067316	0.2835820895522388	0.0816326530612244	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_5	120	0.8726774291806275	0.1935729515686871	0.2238805970149253	0.1632653061224489	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_3	120	0.6296121097445602	0.3770104068117313	0.0397350993377483	0.7142857142857143	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_1	120	0.8513493140358812	0.1778230061812151	0.1940298507462686	0.1616161616161616	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_3	120	0.7627719962157048	0.3902554399243141	0.0662251655629139	0.7142857142857143	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_1	120	0.7403846153846154	0.3944838056680162	0.0197368421052631	0.7692307692307693	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_3	120	0.8271308523409364	0.2178871548619448	0.3235294117647059	0.1122448979591836	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_4	120	0.8724226804123711	0.1560036385688296	0.1470588235294117	0.1649484536082474	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_3	120	0.7748344370860927	0.3736991485335856	0.0331125827814569	0.7142857142857143	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_2	120	0.7687246963562753	0.430668016194332	0.0921052631578947	0.7692307692307693	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_2	120	0.811740890688259	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_3	120	0.6296121097445602	0.3770104068117313	0.0397350993377483	0.7142857142857143	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_4	120	0.8193602183141298	0.2486355366889023	0.3529411764705882	0.1443298969072164	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_5	120	0.8114035087719299	0.3464912280701754	0.0263157894736842	0.6666666666666666	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_2	120	0.8532388663967612	0.311993927125506	0.0855263157894736	0.5384615384615384	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_2	120	0.9575674019607844	0.1007965686274509	0.09375	0.1078431372549019	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_5	120	0.7475328947368421	0.4013157894736842	0.0526315789473684	0.75	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_5	120	0.885470606152909	0.1621992080414255	0.2835820895522388	0.0408163265306122	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_2	120	0.7165991902834008	0.4109311740890689	0.0526315789473684	0.7692307692307693	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_5	120	0.8114035087719299	0.3464912280701754	0.0263157894736842	0.6666666666666666	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_3	120	0.6712393566698203	0.4160359508041627	0.0463576158940397	0.7857142857142857	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	120	0.8768279813055933	0.160033167495854	0.208955223880597	0.1111111111111111	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_1	120	0.5668016194331984	0.4812753036437247	0.0394736842105263	0.9230769230769232	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_5	120	0.8926286932683523	0.180246725555894	0.2686567164179104	0.0918367346938775	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_5	120	0.885470606152909	0.1621992080414255	0.2835820895522388	0.0408163265306122	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_1	120	0.8750188451680989	0.175410824664556	0.1791044776119403	0.1717171717171717	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_2	120	0.9443167892156864	0.1153492647058823	0.171875	0.0588235294117647	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_2	120	0.8312246963562753	0.2988360323886639	0.0592105263157894	0.5384615384615384	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_2	120	0.9037990196078431	0.1447610294117647	0.171875	0.1176470588235294	`cumulative_results.csv`
virchow	BRAF	GMA PUB	split_1	120	0.8723051409618574	0.1775968641640283	0.2238805970149253	0.1313131313131313	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_4	120	0.6538461538461539	0.506578947368421	0.0131578947368421	1.0	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_4	120	0.874620982413584	0.1935263796240145	0.1911764705882352	0.1958762886597938	`cumulative_results.csv`
uni	NRAS	GMA PUB	split_3	120	0.7748344370860927	0.3736991485335856	0.0331125827814569	0.7142857142857143	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_2	120	0.8989736519607843	0.1554840686274509	0.203125	0.1078431372549019	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_5	120	0.8726774291806275	0.1935729515686871	0.2238805970149253	0.1632653061224489	`cumulative_results.csv`
h-optimus-0	BRAF	GMA PUB	split_3	120	0.8837034813925569	0.2003301320528211	0.3088235294117647	0.0918367346938775	`cumulative_results.csv`
virchow2	BRAF	GMA PUB	split_3	120	0.8866296518607443	0.1929771908763505	0.2941176470588235	0.0918367346938775	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_4	120	0.6538461538461539	0.506578947368421	0.0131578947368421	1.0	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_1	120	0.8097165991902834	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_2	120	0.9076286764705882	0.1231617647058823	0.1875	0.0588235294117647	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_2	120	0.9076286764705882	0.1231617647058823	0.1875	0.0588235294117647	`cumulative_results.csv`
prov-gigapath	BRAF	GMA PUB	split_2	120	0.8989736519607843	0.1554840686274509	0.203125	0.1078431372549019	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	1	1.0	0.5	1.0	0.0	`cumulative_results.csv`
gigapath_ft	NRAS	GMA PUB	split_3	120	0.7627719962157048	0.3902554399243141	0.0662251655629139	0.7142857142857143	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_2	120	0.7687246963562753	0.430668016194332	0.0921052631578947	0.7692307692307693	`cumulative_results.csv`
prov-gigapath	NRAS	GMA PUB	split_1	120	0.8097165991902834	0.3593117408906882	0.0263157894736842	0.6923076923076923	`cumulative_results.csv`
h-optimus-0	NRAS	GMA PUB	split_1	120	0.8259109311740891	0.3658906882591093	0.0394736842105263	0.6923076923076923	`cumulative_results.csv`
uni	BRAF	GMA PUB	split_2	120	0.9443167892156864	0.1153492647058823	0.171875	0.0588235294117647	`cumulative_results.csv`
virchow2	NRAS	GMA PUB	split_4	120	0.729757085020243	0.4010627530364373	0.0328947368421052	0.7692307692307693	`cumulative_results.csv`
gigapath_ft	BRAF	GMA PUB	split_1	1	1.0	0.5	1.0	0.0	`cumulative_results.csv`
virchow	NRAS	GMA PUB	split_1	120	0.771255060728745	0.4076417004048583	0.0460526315789473	0.7692307692307693	`cumulative_results.csv`

External Inference Diagnostics Interactive ROC/PR curves for each external inference experiment Inference